genome-level microarray analyses  (DuPont de Nemours)

Journal: Frontiers in Genetics

Article Title: Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria

doi: 10.3389/fgene.2014.00191

Figure Lengend Snippet: World map showing genomic records for cyanobacteria generated using an interface powered by google maps, available on the Genomes Online Database (GOLD) website ( http://genomesonline.org/cgi-bin/GOLD/index.cgi ) . Red labels indicate the original location of a specifically sequenced strain. Labels direct the user to information on the organism, genome characteristics (i.e., GC content, size), sequencing method used, specific coordinates of the origin of the strain, as well as links to external databases (as shown for Prochlorococcus marinus NATL1A). The GOLD also describes the status of each record in tabular format.

Article Snippet: In the study of marine cyanobacteria, genome-level microarray analyses have frequently focused on limiting growth factors in oceans, such as iron (Thompson et al., ), nickel (Dupont et al., ), copper (Stuart et al., ), phosphate (Tetu et al., ; Ostrowski et al., ), and nitrogen (Su et al., ; Tolonen et al., ).

Techniques: Generated, Sequencing

Journal: Frontiers in Genetics

Article Title: Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria

doi: 10.3389/fgene.2014.00191

Figure Lengend Snippet: Publically available full genome sequences for cyanobacteria in various repositories as at April 2014 .

Article Snippet: In the study of marine cyanobacteria, genome-level microarray analyses have frequently focused on limiting growth factors in oceans, such as iron (Thompson et al., ), nickel (Dupont et al., ), copper (Stuart et al., ), phosphate (Tetu et al., ; Ostrowski et al., ), and nitrogen (Su et al., ; Tolonen et al., ).

Techniques:

Journal: Frontiers in Genetics

Article Title: Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria

doi: 10.3389/fgene.2014.00191

Figure Lengend Snippet: Pie chart showing records of expression data for different cyanobacteria that are currently available in the Gene Expression Omnibus (GEO) database ( http://www.ncbi.nlm.nih.gov/geo/ ) . The bias toward Synechocystis 6803 can be clearly seen in this species breakdown of transcriptomic data. Data from April 2014.

Article Snippet: In the study of marine cyanobacteria, genome-level microarray analyses have frequently focused on limiting growth factors in oceans, such as iron (Thompson et al., ), nickel (Dupont et al., ), copper (Stuart et al., ), phosphate (Tetu et al., ; Ostrowski et al., ), and nitrogen (Su et al., ; Tolonen et al., ).

Techniques: Expressing, Gene Expression

Journal: Frontiers in Genetics

Article Title: Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria

doi: 10.3389/fgene.2014.00191

Figure Lengend Snippet: Web-based analytical tools with a specific focus on cyanobacteria as at April 2014 .

Article Snippet: In the study of marine cyanobacteria, genome-level microarray analyses have frequently focused on limiting growth factors in oceans, such as iron (Thompson et al., ), nickel (Dupont et al., ), copper (Stuart et al., ), phosphate (Tetu et al., ; Ostrowski et al., ), and nitrogen (Su et al., ; Tolonen et al., ).

Techniques: Gene Expression